Xenosaga I on hdd doesn't work with codebreaker 9.2

I tried ripping my Xenosaga I disc yesterday, flattened it, transferred over and play fine. Nothing's wrong, except when I try to use codebreaker none of the code seems to work at all.

Does this have something to do with the addresses changed due to the merging of the two layers?

With newest HDLpatch there's no need to flatten, just install as normal.

Meaning I'll have to transfer the ripped image directly instead of through network, right? Would installing within HDL work?

edit: I installed the whole disc directly with WinHiip instead of flattening the image, but it still wouldn't let me use codebreaker.