Updating with burning CD

I try to update my ARMAX codelist without using Flash drive, here what I've done :
I have edit the maxdrive executables both the US and UK version, and I have found this links :
http://www.datelversions.com/ar_max_...odelist_us.bin
http://www.codejunkies.com/v3test/codelist_eu.bin
I downloaded these files, I putted my Armax disc in my cd-rom drive and copy all the files to hard drive.
I open RES\CODELIST, I deleted the the bin files and I put the ones that I downloaded, and rename it to EU_CODELIST.BIN and US_CODELIST.BIN
I open CDGenPS2, then I drag system.cnf into the cdgenps2, I open note pad and look at witch file system.cnf loads then drag that next.
I drag all the other files, I right-click on system.cnf and hit edit,enable the "fix lab" check box and I set it to 12231
I save it to cue/bin files,and burn it with Alcohol 120, using RAW DAO method
I boot it on my ps2, and all the codes is gone !!!!!!
I put the CD back to my CDROM and I noticed some directories in my copy like MEMRES, COD, etc r empty !!!!, while the same directories in the original ARMAX copy aren't empty !!!!
What happened ? Can someone help me ?